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FilterLowshRNAs

Removes shRNAs with low read counts in original DNA plasmid pool. Outputs a GCT file containing filtered shRNA data and a GCT file containing the mean read count for each shRNA in the original DNA plasmid pool.

Language:
R
Operating System:
any
Original Author:
Barbara Weir, Sara Howell;The Broad Institute
Uploaded by:
AchillesTeam on October 08, 2014 09:36
Version Comment:
changed job error status

Updated Contact info for the Achilles Team

Posted by bhill on March 20, 2018 13:00

If you are looking to contact the Achilles Team, please note the primary module developer, Barbara Weir, is no longer at the Broad Institute. She has set up the following email address to answer questions about the Achilles Modules. AchillesTeamArchive@gmail.com

Archived

Posted by bhill on March 10, 2017 16:20

Note that the author lists this module as archived. It is no longer in use, but there are publications which refer to it by this name. For the current version of this method, please see FilterLowPert. (http://gparc.org/view/urn:lsid:8080.gpbroad.broadinstitute.org:genepatternmodules:485:22) This module has also been removed from the GenePattern Public server, as it is archived.

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