Predicts which cell lines should get removed at various points in the Achilles pipeline.
Author: Ann Sizemore;Broad Institute
Contact: AchillesTeamArchive@gmail.com
Algorithm Version:
[Why use this module? What does it do? If this is one of a set of modules, how does this module fit in the set?]
[if applicable: a short overview of the algorithm in normal prose, followed by any details; write overview as if you are explaining to a novice]
[appropriate papers cited]
Name | Description |
---|---|
gct file * | Initial gct file after filterLowPert |
removelist * | Remove list (annotation file for removeSamples) |
sample info file * | Sample info file (annotation file for collapseReps) |
cn segtab * | Copy number seg.txt file (annotation file for CN_Cutoff) |
CN file * | Copy number variants file (annotation file for PertCNFilter) |
keep list | List of lines to keep (from KeepSamples). |
* - required
[provide example data, including input files and parameter settings]. (we’ll put the input files on the ftp site and link to them from the doc)
[any software requirements for running this, e.g., version of R, licensing]
Task Type:
CPU Type:
any
Operating System:
any
Language:
any
Version | Release Date | Description |
---|---|---|
59 |