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CL_Expect v59

Predicts which cell lines should get removed at various points in the Achilles pipeline.

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CN_Cutoff v121

No description provided.

N/A

FPPassFail takes the fingerprinting outputs of a plate and determines those lines which pass.

N/A

Runs the pseudoalignment step of the quantification algorithm for kallisto and is meant for usage in single cell RNA-seq.

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Runs the quantification algorithm for kallisto.

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Matches the genotypes of the input cell lines to all previously run cell lines.

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run ComBat on .gct data file with replicates, using batch information in a replicate summary file with a 'batch' column

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Runs standard QC metrics on log2 normalized or fold change data.

N/A

@GPArchive