Predicts which cell lines should get removed at various points in the Achilles pipeline.
FPPassFail takes the fingerprinting outputs of a plate and determines those lines which pass.
Runs the pseudoalignment step of the quantification algorithm for kallisto and is meant for usage in single cell RNA-seq.
Matches the genotypes of the input cell lines to all previously run cell lines.
run ComBat on .gct data file with replicates, using batch information in a replicate summary file with a 'batch' column