Gene set enrichment assessment in each sample.

Takes alignment files in SAM/BAM format and a feature file in GTF/GFF format (usually with exon annotation), name sorts the alignment file and calculates for each sample the number of reads mapping to each feature. (HTSeq.count...

Just take some time and write a file.  used to enforce a delay for testing purposes.

No description provided.

PTM-SEA for use with PTMsigDB

Visualizes prediction results in JavaScript

A downstream visualization and analysis tool for gene set enrichment results with interactive web visualizer.

Scatterplot visualization tool for analyzing differential gene expression.

Remove samples in dataset (.gct), using a list of samples provided